PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00261.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 544aa    MW: 56687.3 Da    PI: 8.9823
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00261.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-055981123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C++C+k F r  nL+ H r H
  Rsa1.0_00261.1_g00005.1 59 FVCEICNKGFQRDQNLQLHRRGH 81
                             89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-55881IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.58E-75881No hitNo description
PROSITE profilePS5015710.9495981IPR007087Zinc finger, C2H2
SMARTSM003550.0175981IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
SMARTSM00355230101131IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.58E-7131156No hitNo description
SMARTSM0035588136156IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MAPVELENSS TVSGDASGVS STGNLNPPPK KKRNLPGMPD PGAEVIALSP KTLMATNRFV  60
CEICNKGFQR DQNLQLHRRG HNLPWKLRQR SAKDAVRKKV YVCPVSACVH HDPSRALGDL  120
TGIKKHFCRK HGEKKYKCDK CSKKYAVHSD WKAHSKICGT KEYRCDCGTL FSRKDSFITH  180
RAFCDVLAEE SAKNQTNKLY PQPELKSPPA AAAPLTPPNV SAETEPVKIA SPSVRSSSES  240
PNPLEVIMEE APRTIGFNVS SSVISDDDRS GNNNCTPRTI GFNVTSSGLS GDHTSNNNNN  300
NGIYAGLFSS STSSPSLYAS STPSTSLFAP PSSSMEPISL CLSTNPSLYV GPTTIQDPHP  360
PPHFLTPLSL PPPQPAMSAT ALLQKAAQMG STGSGGSLLR GLGIVSSTSS SMELSSHDLG  420
LGLLPPCSSG GSGGSGLKEL MMGNSCVFGP KQTTLDFLGL GRAVGNGSSN PVGGGLSALL  480
TSIGGGGGMD VFGTAGEFPG KDIGRMKAAA AAPLVLILII KSIGVAGGVG GWAEAGVNAG  540
LFSR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18598KLRQRSAKDAVRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280348.10.0hypothetical protein CARUB_v10026275mg
SwissprotQ9LVQ70.0IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLA0A078JJR80.0A0A078JJR8_BRANA; BnaCnng53120D protein
STRINGAT5G66730.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-162C2H2-like zinc finger protein